I helped this user out via our chat room. The problem ended up being directory CHMOD permissions applied to his new uploads. The permissions were set to 700, when they should be set to 755. Once the CHMOD permissions were updated he was able to see the modules on the Uninstalled Modules page.
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“Thank you Yankidank...”
Just for fun, and while I forgot where I grabbed the initial code..
“I suggest you use Winmerge to compare the source code between your old copy and the new version to...”
“Sorry to take a while to get back to you. I assume that you are still having this problem? I am...”
“Well there certainly isn't a simple way to do it, so I'm going to say no....”
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